cabeen

qit-bundle

A tool for creating bundle definitions for the QIT diffusion MRI pipeline

mark

Sync your markdown files with Confluence pages.

qit

A repository for the Quantitative Imaging Toolkit (QIT)

neutube

auditory-pathway

A repository of tools for mapping the auditory pathway with diffusion MRI

awesome-db-tools

Everything that makes working with databases easier

pixel-cnn

Code for the paper "PixelCNN++: A PixelCNN Implementation with Discretized Logistic Mixture Likelihood and Other Modifications"

asitop

Perf monitoring CLI tool for Apple Silicon

atlasreader

Python interface for generating coordinate tables and region labels from statistical MRI images

SynthSeg

Contrast-agnostic segmentation of MRI scans

dMRIharmonization

Multi-site dMRI harmonization

brkraw

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

TRACER

MixMicrobleed

Submission for the VALDO challenge Task2 - microbleed segmentation

nobrainer

A framework for developing neural network models for 3D image processing.

BrukerEyes

BrukerEyes is a cross-platform open-source package for Bruker Datasets management

microdraw

Collaborative vectorial annotation tool for ultra high resolution data.

open-source-mac-os-apps

🚀 Awesome list of open source applications for macOS. https://t.me/s/opensourcemacosapps

micaopen

Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

genforce

An efficient PyTorch library for deep generative modeling.

Roots

Roots is a package designed to take experimentally determined morphometric data and return an artificial neuronal arbor which satisfies the user-defined parameters.

AttractedGrowthConeSearch

This script is used to support the addition of biologically realistic jitter to curves based on histological data. The basic principle of this method is to utilized hypothetical growth cones to control the meander angles which are added in the new line. This is preferable to random jitter which can add extreme meander angles and overlapping segments if not properly controlled. AGCS can be better used to control the parametric distribution of meander angles without disrupting the distribution of segment lengths beyond that which is reasonable.

swc2vtk

swc to vtk converter for visualization of neuron and neural circuit simulation in ParaView

histoannot

online histology annotation webapp

nvm

Node Version Manager - POSIX-compliant bash script to manage multiple active node.js versions

awesome-devtools

A collection of awesome devtools from around the internet

awesome-uses

A list of /uses pages detailing developer setups, gear, software and configs.

djl

An Engine-Agnostic Deep Learning Framework in Java

react

The library for web and native user interfaces.

create-react-app

Set up a modern web app by running one command.