c11cc / dealing-with-genebank-file-

Dealing-with-genebank-file

Description

This script is written with Perl for getting infomation from the genebank file(.gbff, .gb). Features will be extracted to be shown in tab dilimited format.Absent information will be shown as na.

Usage

windows: perl gbk_deal.plx
linux: add "#!/usr/bin/perl" at the begining and then run gbk_deal.plx

Tested genomes with problems

Escherichi Ecoli MG1655
Cytophaga hutchinsonii ATCC 33406
Flavobacterium johnsoniae UW101
Flavobacterium psychrophilum JIP02/86
Porphyromonas gingivalis ATCC 33277

problems: incomplete features cannot be recognized or other problems.

Tested genomes without problem

Bacterodes fragilis YCH46
Yarrowia lipolytica strain CLIB89(W29)