bwubb

Brad Wubbenhorst's repositories

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xHLA: Fast and accurate HLA typing from short read sequence data

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BIOS 635 Introduction to Machine Learning

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Full-spectrum copy number variation detection by high-throughput DNA sequencing

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Collection of scripts for germline sequencing.

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A manual fork of lohhla

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Collection of code for a paired somatic variant calling pipeline.

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NGS pipeline developed with Snakemake for re-calling variants from BAM files using GATK 4.1.0.0 and weCall.

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R examples in Colab

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Attempted patch of Sequenza to R4+

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Fast, accurate and simple to use command line tool for variant detection in NGS data.

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