bwlang

authlogic_radius

Extension of the Authlogic library to add RADIUS support

primer_monitor

a service to allow people to register primers to be monitored for intersecting variants and be notified if new variants arise

barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

bioconda-recipes

Conda recipes for the bioconda channel.

compbio-galaxy-wrappers

OHSU Galaxy wrappers.

configs

Config files used to define parameters specific to compute environments at different Institutions

edittag

edit distance sequence tags and helpers

fgbio

Tools for working with genomic and high throughput sequencing data.

galaxy

Data intensive science for everyone.

htslib

C library for high-throughput sequencing data formats

index2rc

Creates illumina samplesheet with the reverse complement of the second index (index2).

ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

MethylDackel

A (mostly) universal methylation extractor for BS-seq experiments.

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nextflow_conda_cutadapt_trimmo

internal adapters contamination cleaning

nixpkgs

Nix Packages collection

pipeline-resources

Bioinformatics Pipeline and Visualization resources

primer-schemes

PrimerServer2

PrimerServer2: a high-throughput primer design and specificity-checking platform

rust-starter

Rust Starter Project

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

SARS-CoV-2

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

test-datasets

Test data to be used for automated testing with the nf-core pipelines

tools-iuc

Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

usegalaxy-eu-tools

List of tools included in https://usegalaxy.eu

usegalaxy-tools

usegalaxy.* common tools

website

UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)