Geomics and Bioinformatics Hub's repositories
Rshiny_PowerAnalysis
Code for the powerEQTL R shiny application (https://xiaoqil.shinyapps.io/powerEQTL/)
Single-cell-RNA-seq-of-the-CRISPR-engineered-endogenous-tauopathy-model
Scripts for Hassan 2022 scRNA-seq data analysis
amp-pd-workflows
Pipeline definitions used to construct AMP-PD data products
BRAINcode
Script and pipeline for BRAINcode project
bwh-bioinformatics-hub.github.io
Training material for the BWH Genomics and Bioinformatics Hub
Hallacli2022Cell
Bioinformatics code repository for Hallacli et al. Cell 2022
nextflow-RNAseq
Nextflow pipeline for RNAseq analysis
nextflow-scRNAseq
Nextflow for single-cell RNAseq
nextflow_demo
Demo of a Nextflow Pipeline for bulk-RNA Seq
circRNA
This repository contains all the essential codes for the circular RNA project
HUB_notes_scATAC-seq
scATAC-seq notes from Tingting Zhao
HUB_notes_scRNA-seq
scRNA-seq note from Tingting Zhao
kent
UCSC Genome Browser source tree. Stable branch: "beta".
NGS_workflow_RNAseq
Pipeline for RNAseq data analysis
STAT_powerAnalysis
All about power analysis
uk_biobank_qc_pipeline
QC pipeline for uk-biobank imputation data