Beate Vieth's repositories
powsimR
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
scRNA-seq-pipelines
Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
basilisk
Clone of the Bioconductor repository for the basilisk package.
BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
colorRampPaletteAlpha
Helper functions for adding transparency to colors in R and preserving the alpha channel when using colorRampPalette
LaTeX-proposal
The Proposal package for LaTeX
RgCop
Regularized Copula based Feature Selection
simulation-comparison
Snakemake workflow to benchmark scRNA-seq data simulators
zinbwaveZinger
Integrating zingeR with ZINB-WaVE weights