Joe Edwards's repositories
BioProtocol
Repo for a Microbiome Protocol
LifeCycleManuscript
Analyses for Plos Biology Rice Microbiome Manuscript
SoilDomestication
Analysis and figures for upcoming manuscript. Updated regularly, until it is not.
BananaStand
A set of tools for processing amplicon data
VirgatumMicrobiomeGWAS
Analysis scripts for upcoming manuscript
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Blog
Code For Personal Blog
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Dissertation
All files used to generate pdf of my dissertation
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Green-House-Analysis
16S analysis after QIIME for microbial communities of greenhouse grown rice plants
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KmerTax
Trying to classify taxonomies via kmers
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MB_Networks
Software tools for creating and analyzing microbiome co-abundance networks
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Metagenomics
Tools for analyzing and processing metagenomic data.
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MiSeqTools
Tools for processing MiSeq fastq files for input into MED or QIIME
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RMB
A collection of scripts used for analyzing 16S rRNA from Illumina's MiSeq
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