bulbgod

prov-gigapath

Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

efficient-kan

An efficient pure-PyTorch implementation of Kolmogorov-Arnold Network (KAN).

Endo-FM

[MICCAI'23] Foundation Model for Endoscopy Video Analysis via Large-scale Self-supervised Pre-train

saros-dataset

Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

GBmap

Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.

MONET

Transparent medical image AI via an image–text foundation model grounded in medical literature

dsmil-wsi

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

DiffMOT

code for CVPR2024 paper: DiffMOT: A Real-time Diffusion-based Multiple Object Tracker with Non-linear Prediction

4D-Humans

4DHumans: Reconstructing and Tracking Humans with Transformers

slahmr

PARE

Code for ICCV2021 paper PARE: Part Attention Regressor for 3D Human Body Estimation

ScoreHMR

ScoreHMR: Score-Guided Diffusion for 3D Human Recovery (CVPR 2024)

accelerated_features

Implementation of XFeat (CVPR 2024). Do you need robust and fast local feature extraction? You are in the right place!

STAR

RNA-seq aligner

pykan

Kolmogorov Arnold Networks

STACAS

R package for semi-supervised single-cell data integration

analysing_pii_leakage

The repository contains the code for analysing the leakage of personally identifiable (PII) information from the output of next word prediction language models.

SAM-Med3D

SAM-Med3D: An Efficient General-purpose Promptable Segmentation Model for 3D Volumetric Medical Image

SAM-Med2D

Official implementation of SAM-Med2D

herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

bioicons

A library of free open source icons for science illustrations in biology and chemistry

DeSAM

The official repository for DeSAM: Decoupled Segment Anything Model for Generalizable Medical Image Segmentation.

pubmed-landscape

The landscape of biomedical research

DeepProfiler

Morphological profiling using deep learning

2024_Chandrasekaran_NatureMethods

deep-learning-genomics-primer

Contains files for the deep learning in genomics primer.

benchmark-ssl-pathology

Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets

good-features

Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"

awesome-neural-geometry

A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond

Awesome-Diffusion-Models

A collection of resources and papers on Diffusion Models