python convert_dmt_aa2relion4.py --i list_doublet_ida_v1.txt --ostar input.star --angpix pixelSize --bin binFactor --frac_dose fractionDose
The script will read the doc and star files noted in the list to convert to relion.
pixelSize = pixel size of current tomogram.
binFactor = Binning of current tomogram.
fractionDose = Electron dose per view
The output star file can be used as the input for Relion 4.0
NOTE: This script still doesn't convert the shift.
e.g. convert_dmt_aa2relion4.py --i list_doublet_ida_v1.txt --ostar input.star --angpix 8.48 --bin 4 --frac_dose 2
python cmm2dynamotable.py --i table.tbl --o table_out.tbl --cmm sel_markers.cmm
Trim the Dynamo table to selected subtomos based on a Chimera cmm file
The cmm must be generated by dynamo_table2cmm first before cleaning in Chimera/ChimeraX