budsonjelmont's repositories
Jg1Analysis
Various Perl and R scripts for reformatting and visualizing a phosphoproteomic dataset investigating PLCg1-deficient T cells
HeatmapAnalysis
R scripts written to process the results of quantitative comparisons made in Peptide Depot
pepXML2OUT
Java program to parse a pepXML file and make a text file for each PSM summarizing the search results
qValue
Salomon lab software for performing Student's t test on proteomic time series data from Peptide Depot and correcting for multiple hypothesis testing
000
SICquant
Salomon lab SIC quantitation software (autoFill)
Language:R000
tukeyANOVA
Java/R application for applying ANOVA & Tukey's range test to proteomic data from Peptide Depot (original author: Qinqin Ji).
Language:Java000
xSEA-scripts
Scripts supporting the extensible Set Enrichment Analysis feature in the laboratory pipeline