budsonjelmont / varmerger

Service for merging multiple variants in VCF format into a single VCF record

App configuration

The application is configured through a combination of external configuration files and environment variables.

To run

Using the flask built-in dev server

python3 app.py ${config name, one of "dev","prod","development","production", or "default"}

Gunicorn

VARMERGER_CONFIGNAME=${config name, one of "dev","prod","development","production", or "default"} gunicorn --bind 0.0.0.0:5000 wsgi:app

Behind nginx in container