bryan-lunt

EVFoldReimp

A clean-room reimplementation of Chris Sander / Debora S Marks' EVFold

KSP_GMAT

Tools to allow the use of NASA's GMAT for Kerbal Space Program mission planning. Definitely overkill for a videogame, but that's what I enjoy.

PBSJavaDRMAA

Java bindings for the PBS DRMAA interface.

dca_pipeline_services

Docker containers and other things to implement a simple DCA pipeline.

SNOT_lang

Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.

btc_address_checker

Simple script to check if addresses still have balance.

ScientificCompression

Better lossless compression for scientific data that stores float values in ASCII files.

TulsoftTools

Several general Java tools and utility classes

bryan-lunt.github.io

My Github.io page.

deepcontact

DeepContact Software

experiment_output_caching

A simple framework for caching outputs of time-consuming processes. Intended for scientific pipelines.

GEMSTAT

Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

GEMSTAT_refinement_sampler

A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

GEMSTAT_scripts

Various task-agnostic scripting language tools for dealing with GEMSTAT.

GS2

HIPS_Spearmint

Spearmint Bayesian optimization codebase

jupyter-docker-stacks

Opinionated stacks of ready-to-run Jupyter applications in Docker.

lost_jars

Jar files that have become unavailable on the internet due to bitrot. I need these. Will turn into a proper maven repo someday.

nix

Nix, the purely functional package manager

OperonDB

Update of Operon DB

Overmind

AI for Screeps, a multiplayer programming strategy game

py_pointcloud_reader

pandas-based python parser for pointcloud data

shellvars-py

Read shell script environment variables into Python

Soaplab2

Fork of Soaplab2 for my own projects. See : http://soaplab.sourceforge.net/soaplab2/

spearmint

Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Larochelle and Ryan P. Adams. Advances in Neural Information Processing Systems, 2012

star-json

A HDF5 JSON format specification and parser

StarCluster

StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).

tree_rnn

Theano implementation of Tree RNNs aka Recursive Neural Networks.

unsorted-personal-docker

Currently unsorted, dockers for personal use.

Voxel-Terrain

Unity C# procedural terrain using noise and marching cubes