Availability of PureCN copy number calls for DepMap 23Q2

[ssrinivasan2]

Hello,

Thank you so much for this repo!

Just wanted to know - for the most recent DepMap data release, I was able to find the relative CN and CN ratios per gene, but couldn't find the absolute copy numbers.

I saw from a discussion on the DepMap forum that ABSOLUTE calls are available up to CCLE 2019, but that PureCN is being optimized for future releases.

(https://forum.depmap.org/t/classifying-copy-number-alterations/2287)

Just wanted to check in to see if this data is available for the latest release, and if so, where I could find it.

Thank you so much!

[Simone Zhang]

Hi,

Our PureCN data is currently in "beta" so it is not available in the public portal yet. We are hoping to release it at some point in 2024. Please stay tuned!

Thanks,
Simone