Using custom cell-line data

Question

Using custom cell-line data

sion100482 opened this issue a year ago · comments

Hi,
First, I am attempting to run copynumbers.py. However, the error message "No module named 'gumbo_client'" appeared. So I did 'pip install gumbo_client', but I got an error message saying "No matching distribution found for gumbo_client", so I can't find a way. How can I solve it?

Second, using this pipeline, I want to obtain copy number alteration from my cell-line WES data. How can I do it?

Thank you.

Alvin Qin · Answer 1 · Thu Aug 10 2023 22:16:09 GMT+0800 (China Standard Time)

Hi,
Sorry for the late reply, gumbo_client is an internal tool for DepMap only. We will plan to separate internal tool in the future, but that takes a long time to accomplish. Thank you!
Best