Brinkman Lab - Simon Fraser University

islandpath

IslandPath standalone software

BioPython-Convert

Tool to interconvert between various bioinformatics formats that BioPython supports

IslandCompare

Pipeline for detecting and annotating genomic islands and relationships between the respective genomes

islandcompare-cli

IslandCompare Command Line Interface

psortb_commandline_docker

PSORTb command-line docker - Dockerfile and "docker run" wrapper

galaxy-tools

Central repo for all brinkman maintained Galaxy Tools

islandviewer

Perl library to run the IslandViewer backend

curated_GIs

Curated database of labelled Genomic Islands found in publications

cvmfs-csi

irida-container

Deploy IRIDA locally using docker or to a major Cloud provider

islandviewer-ui

Web UI for Islandviewer

MicrobeDB

Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.

bioblend

A Python library for interacting with CloudMan and Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

blend4go

Galaxy API client library for Golang

cloud_recipes

Kubernetes deployment recipies for various third party cloud providers

galaxy

Data intensive science for everyone.

galaxy-client

Galaxy web api client library

galaxy-container

Galaxy container generation and cloud deployment recipes. Uses Buildah, Ansible, and Terraform.

globecorr

irida

Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

irida-plugin-amr-detection

IRIDA Plugin for AMR Detection

IslandViewerClient

Python client for accessing the IslandViewer HTTP API. Use it to upload a genome, set the reference sequence, check job status and download results

monitor

Monitor web services and their SSL certificates

multiviz

IslandCompare multi sequence visualization

rgi_wrapper

RGI galaxy project wrapper

terraform-provider-galaxy

Terraform provider to populate Galaxy instance and manage resources

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

url_minifier

Minifier service that translates HTTP requests to DNS URI record lookups and redirects

vuex-orm-next

The next iteration of Vuex ORM.