Brinkman Lab - Simon Fraser University's repositories
islandpath
IslandPath standalone software
BioPython-Convert
Tool to interconvert between various bioinformatics formats that BioPython supports
IslandCompare
Pipeline for detecting and annotating genomic islands and relationships between the respective genomes
islandcompare-cli
IslandCompare Command Line Interface
psortb_commandline_docker
PSORTb command-line docker - Dockerfile and "docker run" wrapper
galaxy-tools
Central repo for all brinkman maintained Galaxy Tools
islandviewer
Perl library to run the IslandViewer backend
curated_GIs
Curated database of labelled Genomic Islands found in publications
irida-container
Deploy IRIDA locally using docker or to a major Cloud provider
islandviewer-ui
Web UI for Islandviewer
bioconda-recipes
Conda recipes for the bioconda channel.
cloud_recipes
Kubernetes deployment recipies for various third party cloud providers
galaxy-client
Galaxy web api client library
galaxy-container
Galaxy container generation and cloud deployment recipes. Uses Buildah, Ansible, and Terraform.
irida-plugin-amr-detection
IRIDA Plugin for AMR Detection
IslandViewerClient
Python client for accessing the IslandViewer HTTP API. Use it to upload a genome, set the reference sequence, check job status and download results
rgi_wrapper
RGI galaxy project wrapper
terraform-provider-galaxy
Terraform provider to populate Galaxy instance and manage resources
url_minifier
Minifier service that translates HTTP requests to DNS URI record lookups and redirects
vuex-orm-next
The next iteration of Vuex ORM.