bricoletc

WMS_teaching

Tutorial on snakemake

Acanthophis

A comprehensive, opinionated plant variant calling pipeline in Snakemake

backTranslate

bioconda-recipes

Conda recipes for the bioconda channel.

cluster_vcf_records

Python package to cluster VCF records. Used by gramtools and minos

cortex

reference free variant assembly

datasci

delfies

dotfiles

GCP

Genotype confidence percentile header-only c++ implementation

genomepy

genes and genomes at your fingertips

googletest

Googletest - Google Testing and Mocking Framework

gramtools

Genome inference from a population reference graph

lsf

Snakemake profile for running jobs on an LSF cluster

make_prg

Code to create a PRG from a Multiple Sequence Alignment file

minos

Variant call adjudication

MosaicAligner

Gil's HMM-based alignment/recombination software from Zilversmit et al. 2013.

nf-core-configs

Config files used to define parameters specific to compute environments at different Institutions

phd-thesis-template

A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)

project_rosalind

purge_dups

haplotypic duplication identification tool

py-cortex-api

Python API for cortex

Ratatosk

Hybrid error correction of long reads using colored de Bruijn graphs

research-software

:computer: Instructions, tips and issue tracker for the software on the EBI computing cluster

scipy

SciPy library main repository

seqan

SeqAn's official repository.

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

snakefmt

The uncompromising Snakemake code formatter

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

TE-Aid

Annotation helper tool for the manual curation of transposable element consensus sequences