brianhill11

auviewer

uclathes

UCLA Thesis LaTeX style

EHR_MRS_UCLA

A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.

deeprank

An implementation of deep ordinal regression in Keras for ranking problems.

tigramite

Tigramite is a python package for causal inference with a focus on time series data. The Tigramite documentation is at

PySensemakr

Python implementation of the original R sensemakr package: https://github.com/carloscinelli/sensemakr

mrsensemakr

fhir

FHIR Protocol Buffers

fancyimpute

Multivariate imputation and matrix completion algorithms implemented in Python

dtreeviz

A python library for decision tree visualization and model interpretation.

keras-attention

Keras Attention Layer (Luong and Bahdanau scores).

pymc-resources

PyMC educational resources

statrethinking_winter2019

Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019

nbstripout

strip output from Jupyter and IPython notebooks

causal_inference_python_code

Python code for part 2 of the book Causal Inference: What If, by Miguel Hernán and James Robins

dowhy

DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

psets

Consolidate all problem sets into one repo

nbdime

Tools for diffing and merging of Jupyter notebooks.

mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

tqdm

:zap: A Fast, Extensible Progress Bar for Python and CLI

mimic3-benchmarks

Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.

imbalanced-learn

A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning

sampleproject

A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing Projects"

GenomicsDB

GenomicsDB

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.