Brian Connelly's repositories
BEACONToolkit
Tools for working with modern scientific data
PlateTools
Python tools for reading, manipulating, and analyzing microplate data
nicheconstruct
Model, Data, and Analysis for "Negative Niche Construction Favors the Evolution of Cooperation"
avidaR
Tools for reading and manipulating Avida data sets
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brush-R
R brush module for SyntaxHighlighter
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ggplot2_stuff
Themes, scripts, etc. for using ggplot2
mutationtree
Tree-based model for studying mutation dynamics
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pronto
R package for retrieving data from Seattle's Pronto cycle sharing system
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push.py
Command line utility for sending push notifications
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resource-biofilm
Model, configuration, data, analysis, and figures for Resource Abundance and the Critical Transition to Cooperation