convert somalier format to VCF/PED

[adigenova]

Dear @brentp,

thanks for the awesome tool. I'm just wondering if there is a way to convert *.somalier file to VCF/PED for performing additional analysis?

Thanks in advance,

Best regards,

Alex

[Brent Pedersen]

Hi Alex,
that is possible, but you'd have to do some coding yourself. You can see how to parse the somalier files in python here: https://github.com/brentp/somalier/blob/master/scripts/ancestry-predict.py

You could modify that to then output a simple VCF.

[adigenova]

Cool, thanks!