adigenova

adigenova's repositories

wengan

An accurate and ultra-fast hybrid genome assembler

Language:PerlAGPL-3.083 7 77

fast-sg

Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

Language:C++MIT22 2 4

uohpmd

Curso Procesamiento Masivo de Datos (PMD) UOH 2022

Language:Jupyter NotebookMIT7 10

uohdb

Repository for database course UOH

Language:Jupyter Notebook3 10

fastmin-sg

FAST-SG idea implemented using minimizer and chaining with the minimap2 API.

Language:CMIT2 10

DCBI1302

Advance programming for Bioengineering PhD

Language:Jupyter NotebookMIT100

adigenova.github.io

personal website

Language:HTMLMIT010

ampliconarchitect-nf

Nextflow pipeline to discover ecDNA on cancer genomes

Language:NextflowMIT000

discovarexp-51885

Not my work, just a repo for DiscovarDenovo version 51885

Language:C++MIT01 1

genome_assembly_workshop

A repository demonstrating genome assembly using Google colab

Language:HTMLMIT010

intervalmiss

Ultra-fast detection and split of miss-assembled contigs using pair-end reads.

Language:C++MIT010

liger

Synthetic Scaffolding Graph construction, Overlaps, Scaffolding, Validation, Gap filling and Polishing

Language:C++AGPL-3.001 2

multiomics_training

Repo to hold some code for the multiomic training at IARC

010

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

Language:C++MIT000

seqtk

Toolkit for processing sequences in FASTA/Q formats

Language:CMIT010

tpp

Curso Introductorio de Python para alumnos de Tercero y cuarto Medio

Language:Jupyter Notebook010

trio_binning

Programs implementing the trio-binning genome assembly method

Language:PythonMIT000

wengan_demo

This repository contains a test dataset and the instructions to run Wengan (version 0.1).

010