Brejnev Muhire's repositories
SDTv1.3
Sequence Demarcation Tool - version 1.3 (SDTv1.3)
SDT-python
SDT (Species Demarcation Tool - Python Version 1.0 ) for Linux/MAC
SDTMPI-python
SDTMPI_Linux (Sequence Demarcation Tool MPI for 32 and 64 bit Linux operating systems)
SDTv1.2
Sequence Demarcation Tool Version 1.2 (SDTv1.2) is a free and easy to use program that allows classification of virus sequences based on sequence pairwise identity. It takes as input a FASTA file of aligned or unaligned DNA or protein sequences and aligns every unique pair of sequences, calculates pairwise similarity scores, and displays a colour coded matrix of these scores. It also produces both a plot of these pairwise identity scores and text files containing analysis results. The identity scores are calculated as 1-(M/N) where M is the number of mismatching nucleotides and N the total number of positions along the alignment at which neither sequence has a gap character.