bravokid47

iterm2

An arctic, north-bluish clean and elegant iTerm2 color scheme.

tomorrow-theme

Tomorrow Theme

ibis

the portable Python dataframe library

mMass

Mass Spectrometry Tool

metaSpectraST

An unsupervised and database-independent analysis tools for metaproteomic MS/MS data using spectrum clustering.

arguelles

Simple, typographic beamer theme

mermaid

Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown

mermaid-filter

Pandoc filter for creating diagrams in mermaid syntax blocks in markdown docs

pyteomics

Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.

RawTools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.

PASS

Proteome Assembler with Short peptide Sequence

peptide-shaker

Interpretation of proteomics identification results

OlinkRPackage

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.

Comet

An tandem mass spectrometry (MS/MS) sequence database search tool.

spades

SPAdes Genome Assembler

cdhit

Automatically exported from code.google.com/p/cdhit

drep

Rapid comparison and dereplication of genomes

denovogui

Graphical user interface for de novo sequencing of tandem mass spectra

ThermoRawFileParser

Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

ms2pip

MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

ThermoRawFileParser

Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

DeepNovo

Protein Identification with Deep Learning

csvtk

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

Brain

WantWords

An open-source online reverse dictionary.

z

z - jump around

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

tqdm

:zap: A Fast, Extensible Progress Bar for Python and CLI

ANCOM-BC-Code-Archive

Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.

cheatsheets

Cheatsheets for web development - devhints.io