brangl

Joint-Learning-for-Alzheimer-disease

[MedIA 2024] This is a code implemention of the joint learning framework proposed in the manuscipt "Joint learning framework of cross-modal synthesis and diagnosis for Alzheimer's disease by mining underlying shared modality information".

RETFound_MAE

RETFound - A foundation model for retinal image

Contrast-DiffAE

Lung-Vessel-Segmentation-Using-Graph-cuts

AirQuant

AirQuant is a framework based in MATLAB primarily for extracting airway measurements from fully segmented airways of a chest CT.

medicalpycoco

Helper functions to create COCO datasets

ImageNetwork

Create graph networks of N dimensional binary images for analysis with python using NetworkX and NumPy.

batchgenerators

A framework for data augmentation for 2D and 3D image classification and segmentation

niicat

This is a tool to quickly preview nifti images on the terminal

ott

tutorials

MONAI Tutorials

nnUNet

GraphSAGE

Representation learning on large graphs using stochastic graph convolutions.

population-gcn

Graph CNNs for population graphs

pytorch-deform-conv

PyTorch implementation of Deformable Convolution

Deformable-ConvNets

Deformable Convolutional Networks

InnerEye-DeepLearning

Medical Imaging Deep Learning library to train and deploy 3D segmentation models on Azure Machine Learning

InnerEye-CreateDataset

InnerEye dataset creation tool for InnerEye-DeepLearning library. Transforms DICOM data into mask for training Deep Learning models.

Integrated-Gradients

Attributing predictions made by the Inception network using the Integrated Gradients method

DeepReg

Medical image registration using deep learning

twilio-python

A Python module for communicating with the Twilio API and generating TwiML.

Linking-CNN-GCN

Artery vein separation

pulmonary-vascular-tree-matching

The source code works for pulmonary vascular tree matching, including a data set with 10 synthetic trees for evaluation

GCMex

Matlab wrapper to Veksler, Boykov, Zabih and Kolmogorov's implementation of Graph Cut algorithm. Use the following citation if you use this software. There is a simple example of image segmentation using GraphCuts.

COVID-19

covid-chestxray-dataset

We are building an open database of COVID-19 cases with chest X-ray or CT images.

SuStaInMatlab

Subtype and Stage Inference [Young+, Nature Communications 2018]

pySuStaIn

Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.

torchio

Medical imaging toolkit for deep learning

gated-graph-neural-network-samples

Sample Code for Gated Graph Neural Networks