Boyko Vodenicharski's repositories
unsupervised_cells_supn
Experiments, evaluation, and models for "Cell Anomaly Localisation using Structured Uncertainty Prediction Networks" in MIDL'22
Augmentor
Image augmentation library in Python for machine learning.
boykovdn.github.io
A simple website I use to play around with
cholespy
An easily integrable Cholesky solver on CPU and GPU
circles_from_edges
[WIP] This package aims to detect edges in RBCs and to fit a circular contour along the edge using an iterative algorithm.
ilastik
ilastik-shell, applets, and workflows to string them together.
workshop-game
Simple point-and-click game for a workshop in Africa
elf
Utils and convenience functions for large-scale bio-image analysis.
gpu-meanshift-segmentation
High Performance Computing on Graphics Processing Units, Mean Shift Image Segmentation
Graph-WaveNet
graph wavenet
lazyflow
lazy parallel ondemand zero copy numpy array data flows with caching and dirty propagation
openflexure_microscope
A 3D printable microscope and translation stage
openflexure_microscope_software
Python scripts to run the OpenFlexure Microscope
openpiv-python
OpenPIV is an open source Particle Image Velocimetry analysis software written in Python, Matlab and C++
part2project
Part II computational project (Surveying Telescopes) along with review article on plasmonics. Reference purposes.
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
python-temika-reader
A lightweight python class to read .movie files and do the basics
Pytorch-UNet
PyTorch implementation of the U-Net for image semantic segmentation with high quality images
pytorch_geometric_temporal
PyTorch Geometric Temporal: Spatiotemporal Signal Processing with Neural Machine Learning Models (CIKM 2021)
scipy
Scipy library main repository
usaf_analysis
Python scripts to analyse images of USAF test targets and edges
volumina
Volume Slicing and Editing