Nick Greenfield's repositories

query

Interactive SQL database exploration in Python

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nimrod-bloom

Bloom filter implementation in Nimrod

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nimrod-murmur

MurmurHash3 wrapper in Nimrod

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nanocall

An Oxford Nanopore Basecaller

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altair

Declarative statistical visualization library for Python

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cual-id

A package for creating and managing sample identifiers in comparative -omics datasets.

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flask-security-1

Quick and simple security for Flask applications

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homebrew

:beer: The missing package manager for OS X.

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hydra

OpenID Connect certified OAuth2 Server - cloud native, security-first, open source API security for your infrastructure. Written in Go. SDKs for any language.

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instructor

structured outputs for llms

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iobio.viz

Visualization and charting JS library for streaming genomic data

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konch

Configures your Python shell.

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kraken

Kraken taxonomic sequence classification system

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METADATA.jl

Metadata for registered Julia packages.

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MetaPalette

Metagenomic profiling and phylogenetic distances via common kmers

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needletail

Fast k-mer methods in Rust

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nextflu

Real-time tracking of influenza evolution

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Nim

Nim (formerly known as "Nimrod") is a compiled, garbage-collected systems programming language which has an excellent productivity/performance ratio. Nim's design focuses on efficiency, expressiveness, elegance (in the order of priority).

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nim-pymod

Auto-generate a Python module that wraps a Nim module.

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NimLime

Super Nim Plugin for Sublime Text 2/3

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onecodex

Command line interface and Python client library for the One Codex API

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packages

List of packages for Nimble

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potion

Flask-Potion is a RESTful API framework for Flask and various Python ORMs

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potion-client

A Python client for APIs written in Flask-Potion

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pysaml2

Python implementation of SAML2

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SHOGUN

SHallow shOtGUN profiler

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taxonomer_0.5

full taxonomer cython repository

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workflows

Bioinformatics curated workflows that use Biocontainers tools

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