Dockerfile for tophat v2.0.14 with bowtie 2.2.5. Loading docker image by executing command like
docker run -it -v `pwd`:/data bonohu/ubuntu-tophat2
After cd /data, execute command like
tophat -o out -p 2 -r 100 1_1.fastq 1_2.fastq
Dockerfile for running tophat2
Dockerfile for tophat v2.0.14 with bowtie 2.2.5. Loading docker image by executing command like
docker run -it -v `pwd`:/data bonohu/ubuntu-tophat2
After cd /data, execute command like
tophat -o out -p 2 -r 100 1_1.fastq 1_2.fastq