Renzo's repositories
TuttiFrutti
TuttiFrutti is a collection of R functions and R scripts for various utilities and tools with a focus on animal breeding and genomics.
Agriculture
CRAN Task View: Agricultural Science
awk
One-liners and awk scripts
CRAN-checks
Notes about extra CRAN checks
detectRUNS
detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity
DRP
R package to calculate deregressed proofs, and its reliabilities and weights.
Gists
Link to GitHub Gists
Integration_EBV_and_GEBV
R functions for the integration of international (G)EBV into national evaluations
flashpca
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
github-slideshow
A robot powered training repository :robot:
MoBPS
Modular Breeding Program Simulator
plinkQC
R package for quality control of plink genetic datasets
rTASSEL
R front-end for TASSEL
SNPchimpRepo
Helpful handful of programs, completely open-source and free
SqueezeMeta
A complete pipeline for metagenomic analysis