Brian O'Meara's repositories
taxon2tree
Workflow to make a tree from a taxon, leaning heavily on phylotaR
treevo_paper
Simulations and other analyses for treevo paper
BioGeoBEARS-1
BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts
closesamples
Package for picking taxa randomly, and then getting the nearest close relative you actually have data for.
corHMM
Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
ctv
CRAN Task View Initiative
discrete_drake_2021
Workflow to run analysis of discrete traits
docs
Serves as the master copy of important public documents, such as the constitution
EEB_Teaching_Schedule
Arrange schedule for Spring 2022
extendedSurface
Fit Complex Multi-OU Models by Extending SURFACE and Providing an Interface with OUwie
fishyenergy
Energetics of fishes
flipped
Various coin flipping models
gen3sis-R-package
Repository of the R-packageGen3sis
improving-conferences
A database for scientific conferences and their key features
MicajahPlanningDocs
Planning docs of the Micajah Pond development in Plymouth, MA
misconduct
Package to check names against a misconduct database to flag for manual inspection
phydocker
Dockerfile for phylogenetics in R
phylotaR
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
selac
Model by O'Meara, Chai, and Gilchrist for SELection on Amino acids and/or Codons
spatialcontrast
Independent contrasts... in space!
SpeciesFlashCards
Quick app to make flash cards for learning species
testspatialcontrasts
Workflow to test spatial contrasts
uselessmachine
Code for a useless machine
vaccication
Simple data on vaccination