John Bogovic's repositories
emboBioImage2023_registration
Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course
imglib2-ij
Translation between ImgLib & ImageJ data structures (both 1.x and 2)
ome-ngff-java
Metadata stubs of the NGFF specification in Java
Beamer-Theme-Janelia
A minimalist and modern Beamer theme
bigdataviewer-biop-tools
Another repo for bdv tools.
bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
bigdataviewer-vistools
Helpers to use BigDataViewer as a quick visualization tool in other projects.
bigdataviewer_fiji
Fiji plugins for starting BigDataViewer and exporting data.
fiji-scripts
A wild collection of useful and partially broken scripts for Fiji and TrakEM2
ijp-imagetoatlas
2D sections to 3D atlas registration with Fiji and QuPath
imglib2-algorithm
Image processing algorithms for ImgLib2
imglib2-cache
Cache interfaces and java.lang.ref based implementation.
imglib2-roi
Regions of interest (ROIs) and labelings for ImgLib2
JaneliaDataStandards
A central hub for Janelia's bioimaging schemas, standards, and data formats.
multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
openorganelle-blog
Periodic content for openorganelle
ossi-website
Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.
ParticleGraph
Graph fitting particle trajectories
pom-scijava
Friendly base POM for all SciJava-based software
scijava-common
A plugin framework and application container with built-in extensibility mechanism :electric_plug: