Boer223

DEM

Dual-extraction method for phenotypic prediction and functional gene mining of complex traits

Helixer

Using Deep Learning to predict gene annotations

famCircle

NextPolish2

Repeat-aware polishing genomes assembled using HiFi long reads

Tutorial_pan_genomics

Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial presents an example using two haplotypes of the optix locus in Heliconius butterflies.

GreenPepper

ntSynt

Detecting multi-genome synteny using minimizer graph mapping

HPC-GVCW

Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.

CentIER

GINGER

GraffiTE

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

LRSDAY

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

HiTE

High-precision TE Annotator

ChatReviewer

ChatReviewer: 使用ChatGPT分析论文优缺点，提出改进建议

ChatPaper

Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

HapHiC

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

MEPmodeler

Predict MicroExons in Plant Genomes

compleasm

A genome completeness evaluation tool based on miniprot

wally

Wally: Visualization of aligned sequencing reads and contigs

HiCAT

HiCAT new project

espresso

DeepBSA

DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.

telomeric-identifier

Identify and find telomeres, or telomeric repeats in a genome.

quarTeT

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

docker-zerotier-moon

🐳 A docker image to create ZeroTier moon in one step.

CAPG

PangenomeEvolution

scripts used in Rice Pangenome Projects (Evolution).

MATO

MATO: Measurement and Analysis TOol

GeneMiner

GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data

RASP

Reconstruct Ancestral State in Phylogenies