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Fengyuan Hu (boboppie)

boboppie

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Company:AstraZeneca

Location:Cambridge, UK

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Organizations
modENCODE-DCC

Fengyuan Hu's repositories

kruschke-doing_bayesian_data_analysis

John K. Kruschke's Doing Bayesian Data Analysis: A Tutorial with R and BUGS

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RiboTaper

A copy of RiboTaper v1.2

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RSSS

A comparative study of RNA-seq analysis strategies

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ORFLine

A project to discover novel open reading frames in immune system

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RibORF

Identify translated ORFs using ribosome profiling by Zhe Ji

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DeepLearningBook

MIT Deep Learning Book in PDF format

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hgvs

HGVS variant name parsing and generation

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ngs-in-bioc

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

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ORF-RATER

Regression-based annotation of protein-coding sequences from ribosome profiling data

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Reading-List

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RiboML

Machine learning classification on Ribosome Profiling to predict small open reading frames

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ribosome-profiling-analysis-framework

Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.

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allbiotc2

Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.

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bioc-refcard

Bioconductor quick reference card / cheat sheet

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Bios366

Advanced Statistical Computing at Vanderbilt University's Department of Biostatistics

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boboppie.github.io

Fengyuan's personal site

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book

Compiled and pretty version of labs

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cnvHitSeq

version 0.1.5 maintained in Haematology

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ExomeDepth

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multiisotonic

Multidimensional isotonic regression

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notebooks

Jupyter notebooks

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ORFLine-singularity

Repo for making orf-discovery pipeline singularity image

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R_marginal_plot

Function to plot xy-plot with marginal density functions

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sequences

Educational package used in an R course to illustrate OO programming and package development.

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spectre

Spectral coherence classification of actively translated regions in ribosome profiling sequence data.

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StructureVariation

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TeachingMaterial

Various teaching material

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ThinkBayes

Jupyter Notebooks derived from Allen Downey's book Think Bayes.

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UseBioconductor

Training material for intermediate R / Bioconductor courses

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zero-dependency-problems

Real-world code problems in R, without dependencies

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