Giters
bmeg
/
bmeg-etl
ETL configuration for BMEG
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Stargazers:
1
Watchers:
4
Issues:
201
Forks:
2
bmeg/bmeg-etl Issues
Distance calc w funnel
Updated
22 days ago
FHIR mint-ids
Updated
22 days ago
Add schema to repo
Closed
5 months ago
Comments count
1
GDC -> FHIR
Closed
5 months ago
Comments count
1
Update BMEG schema descriptions to be a bit more descriptive
Closed
5 months ago
Comments count
1
Library call (or user defined env libraries) in sifter config pipeline's map
Closed
5 months ago
csv tableload
Updated
5 months ago
Lift Schema Rc6 + FHIR
Updated
9 months ago
Comments count
3
Map TCGA and CCLE samples to common ontology
Updated
2 years ago
Comments count
1
PFAM review
Updated
2 years ago
G2P liftover to GRCh38
Updated
2 years ago
GDSC Gene Expression Data
Updated
2 years ago
Better way to filter tumor sample/aliquot
Closed
2 years ago
GWAS Catalog
Updated
2 years ago
Database of curated mutations (DoCM)
Updated
2 years ago
GDSC copy number data
Updated
2 years ago
Allele Refactoring [HG38 liftover, VariantRepresentation, g2p v2.0, Parse more VEP fields]
Updated
2 years ago
duplicates in GeneOntologyAnnotation.Edge.json
Closed
2 years ago
Comments count
3
Normalize top level attributes for Case/Sample/Aliquot
Updated
2 years ago
Create Diagnosis Vertex
Closed
2 years ago
Comments count
2
Compound SB525334 or SB-525334?
Closed
2 years ago
Comments count
3
CCLE copy number data
Updated
2 years ago
DisGeNET
Updated
2 years ago
PharmGKB
Updated
2 years ago
PRISM
Updated
2 years ago
upgrade dvc
Closed
5 years ago
Comments count
1
Duplicate alleles?
Closed
5 years ago
Comments count
3
CCLE/CTRP/GDSC/GTeX: Link Projects to Samples
Closed
5 years ago
Standardize on edge naming conventions
Closed
5 years ago
Comments count
2
Reverse edge direction between Program/Project/Case/Sample/Aliquot
Closed
5 years ago
Comments count
3
RC7
Updated
2 years ago
Harmonize DrugResponse data for CCLE/CTRP/GDSC
Closed
5 years ago
Comments count
1
Cell lines case vertices missing properties
Closed
5 years ago
DGIdb
Closed
5 years ago
Comments count
1
CCLE/CTRP/GDSC: Samples/Aliquots should be program specific
Closed
5 years ago
MSigDB
Closed
5 years ago
Comments count
1
GDSC / CTRP fix ActArea
Closed
5 years ago
transformation scripts should be listed as dependencies in DVC files
Closed
5 years ago
Comments count
1
V([big_list]) produces no results ?
Closed
5 years ago
Comments count
3
Run bloom filter link checker on output files on RC3
Closed
6 years ago
Comments count
1
Edge Connecting drug response studies to profiled drugs
Closed
6 years ago
Comments count
1
Revisit integrations tests
Closed
6 years ago
Comments count
2
Duplicate Publications http versus https in URL
Closed
6 years ago
Some G2P HasSupportingReference edge To ids contain whitespace
Closed
6 years ago
Need to dedup Publication vertices
Closed
6 years ago
CNA values are strings
Closed
6 years ago
Send email about getting help on RPPA antibody mapping
Closed
6 years ago
Comments count
2
Test load of current dataset and current GRIP
Closed
6 years ago
Redundant Drug Response Structures
Closed
6 years ago
Comments count
2
Missing DVC entry for source/ensembl/missing_transcript_ids.txt
Closed
6 years ago
Comments count
3
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