Beast code in Giters

Brian Trippe's starred repositories

Scaffold-Lab

A comprehensive benchmark on the performances of multiple protein backbone generative models.

Language:Jupyter NotebookMIT2600

c_values

Confidently Comparing Estimators with the c-value

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RFdiffusion

Code for running RFdiffusion

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twisted_diffusion_sampler

Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training

Language:Python3200

se3_diffusion

Implementation for SE(3) diffusion model with application to protein backbone generation

Language:PythonMIT29000

ProtDiff_SMCDiff

Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/abs/2206.04119

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silent_tools

A bunch of shell utilities for dealing the silent files

Language:PythonMIT4400

riemannian-score-sde

Score-based generative models for compact manifolds

Language:Jupyter Notebook9400

overpruning_in_variational_bnns

synthetic data experiments for over-pruning in variational bayesian neural networks

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CDE_with_BNF

Toy Examples of Conditional Density Estimation with Bayesian Normalizing flows

Language:Python2100

bayesian-coresets

Automated Scalable Bayesian Inference

Language:PythonMIT12800

fbpca

Fast Randomized PCA/SVD

Language:PythonNOASSERTION49100

phd-thesis-template

A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)

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KMMMs

K-mer Motif Multinomial Mixtures

Language:PythonGPL-3.0400

tensorflow

An Open Source Machine Learning Framework for Everyone

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