bloyl

DiffusionImagingTK

This is a module for ITK: The Insight Toolkit for Segmentation and Registration. It is designed to work with the ITKv4 modular system and to be places it ITK/Modules/External or uses as a Remote module. This modular is a collection of tools written to allow for analysis of diffusion weighted magnetic resonance imaging (DW-MRI / DWI).

itkSpatialObjectWriters

collections of classes useful for writing / convertering ITK spatial objects to other formats

3d-mri-brain-tumor-segmentation-using-autoencoder-regularization

Keras implementation of the paper "3D MRI brain tumor segmentation using autoencoder regularization" by Myronenko A. (https://arxiv.org/abs/1810.11654).

bids-qsiprep

brainstorm3

Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology

datasciencecoursera

datasharing

The Leek group guide to data sharing

dipy

Diffusion MR Imaging in Python

docker-opengl

Multi-Arch Docker - Mesa 3D OpenGL Software Rendering (Gallium) - LLVMpipe, and OpenSWR Drivers

FID-A

Toolbox for simulation and processing of in-vivo magnetic resonance spectroscopy (MRS) data

fieldtrip

The MATLAB software toolbox for MEG and EEG analysis

fsl_mrs

Mirror of the FSL-MRS gitlab repository

fw-heudiconv

Heuristic-based Data Curation on Flywheel

Gannet2.0

hnn

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

hnn-core

Simulation and optimization of neural circuits for MEG/EEG source estimates

ipyvtk-simple

minimal ipywidget to interface with any Python vtkRenderWindow

itkBuildExternalModule

An example Cmake structure to show how to include External ITK modules in a project by building them outside of the ITK source tree.

MegNET_2020

This project contains code for the manuscript "MEGnet: Automatic ICA-Based Artifact Removal for MEG using Spatiotemporal Convolutional Neural Networks".

mne-bids

MNE-BIDS

mne-docker

Repository for mne docker images

mne-python

MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

mne-realtime

Realtime data analysis with MNE-Python

mne-testing-data

Data for mne-python testing

mne_docker

nipype

Workflows and interfaces for neuroimaging packages

osprey

All-in-one toolbox for processing of magnetic resonance spectroscopy data.

ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

scikit-kinematics

Python functions for working with 3D kinematics.

spec2nii

Multi-format in vivo MR spectroscopy conversion to NIFTI