blinard-BIOINFO

Benjamin Linard's repositories

NCBITaxonomy

Tools to build a copy of the NCBI Taxonomy database in a local SQL schema and query it via a Java package.

Language:JavaMIT4 20

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT100

suspend_fix_13-V001NF

HP Spectre 13 (vnf001 or 13-V001NF) not going in sleep/suspend under Linux.

MIT1 10

AGREP - approximate GREP for fast fuzzy string searching. Files are searched for a string or regular expression, with approximate matching capabilities and user-definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona. ISC open source license since Sept. 2014.

Language:CNOASSERTION000

alimanfoo.github.io

Alistair Miles' blog

Language:Jupyter Notebook000

awesome-pangenomes

A list of software for pangenomics

MIT000

CATCh

for bioconda recipe, based on open source code from https://science.sckcen.be/en/Institutes/EHS/MCB/MIC/Bioinformatics/CATCh

Language:PerlGPL-3.0010

CROP

CROP: Clustering 16s rRNA for OTU Prediction

Language:C++010

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

Language:PythonGPL-3.0000