Blekhman Lab's repositories
host_gene_microbiome_interactions
Analysis framework for integrating gut microbiome and host gene expression data
biomehorizon
Plot microbiome time series in parallel
rxivist_web
Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org
compendium-manager
Metadata ingest service
compendium_website
Website for the Human Microbiome Compendium
docker_dada2
Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.
milk_infant_microbiome
Project on breast milk and infant gut microbiome
Primates
This repository contains scripts related to the publication "Interspecies variation in hominid gut microbiota controls host gene regulation."
rxivist_spider_biorxiv
Web crawler that indexes preprints posted to bioRxiv.org and medRxiv.org.
snakemake-template
Quickstart for building out a new snakemake pipeline
universal_microbiome_h2
Files and R script for Gut microbiome heritability is near-universal but environmentally contingent
biorxiv_countries
Code repository for "International authorship and collaboration in bioRxiv preprints"
compendium_v1
Code associated with the first publication describing the Human Microbiome Compendium