Burak Kutlu's repositories
deeplearning-biology
A list of deep learning implementations in biology
polygenic-risk-scores
Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BiobankRead-Bash
Python scripts to extract and pre-process UKB data
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
burak.github.io
Repository for my personal page
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
dpbuild
https://amashadihossein.github.io/dpbuild/
dpi
https://amashadihossein.github.io/dpi/
kaggle.openprobs.scrseq
Kaggle open problems in single cell competition - 2023 September
katacoda-scenarios
Katacoda Scenarios
Machine-Learning-Projects
Machine Learning Experiments and Work
shiny-server
My personal Shiny server
shinydashboardPlus
extensions for shinydashboard
single-cell-viewer
R package to visualize scRNA sequencing data.
TwoSampleMR
R package for performing 2-sample MR using MR-Base database
UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
visNetwork
R package, using vis.js library for network visualization
vscode-r
Setting R Development Environment with VScode, Dev Containers, and Docker