bkille

BitLib

Provides a bit-vector, an optimized replacement of the infamous std::vector<:b:ool>. In addition to the bit-vector, the library also provides implementations of STL algorithms tailored for bit-vectors.

impg

implicit pangenome graph

tMHG-Finder

wgatools

Whole Genome Alignment Tools

bioarxiv-template

LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.

bioconda-recipes

Conda recipes for the bioconda channel.

bit

The Bit Library

bit-algorithms

An exploratory implementation of bit overloads of the C++ standard algorithms

bitarray

efficient arrays of booleans for Python

bkille

bkille.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

DiversitySampling

FastANI

Fast Whole-Genome Similarity (ANI) Estimation

itsy_bitsy

Bit containers, sequences, and views for everyone. 🕷️

Leetcode

Leetcode solution writeups, new problems, and useful auxiliary code.

libbf

:dart: Bloom filters for C++11

libsimdpp

Portable header-only C++ low level SIMD library

lofreq

LoFreq Star: Sensitive variant calling from sequencing data

MashMap

A fast approximate aligner for long DNA sequences

mashmap3-evaluation

Evaluation scripts for MashMap3

minimizers

Reference implementations of minimizer schemes to go with the mod-minimizers paper.

ModDotPlot

pooled-testing-sim

A simulator for mutli-stage pooled testing strategies.

RAMBO

RESP

sattools

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

transmissiontoolkit

ValidateMe

A toolkit for validating multiple sequence alignments.

wfmash

base-accurate DNA sequence alignments using WFA and mashmap2