Blake Joyce's repositories
titanic_data_exploration
Workshop Jupyter Notebooks for Data Carpentry Workshop
cereus
proposal for data storage
container-structure-test
validate the structure of your container images
data_analysis_pipeline
Data analysis pipeline with dada2
Distributed_data_benchmarking
Code to benchmark distributed data protocols, systems, and everything thing else. Started for the 2019 IPFS Camp.
fly-nextcloud
A Nextcloud Deployment & Management System for Fly.io
fly-restic
Backup Any Rclone Remote to Another Using Restic on Fly.io
Goat_Path_Git_Lesson
It's the miminum viable git lesson for researchers, also known as the "Goat Path Git." The Oxford definition of goat path is: A (narrow) path or track, especially on a hillside or mountain, such as is made by goats. Here we take a narrow path in describing Git that is useful for beginning research coders.
registry
The Core Registry of Container Blueprints for the Autamus Build System
ResBazTutorialGit
2020 tutorial
researcher_facing_readthedocs
The repository for UAB Research Computing researcher facing read the docs. https://bjoyce-researcher-facing-readthedocs.readthedocs.io/en/latest/
researchsoftware.org
International RSE website
rse-phenotypes
Contribute your Research Software Engineer (RSE) phenotype!
singularity-container-test
A workflow for structure testing of singularity containers
UA_HPC_University_Metrics_Dashboard
A repository to create an automatic dashboard for HERD, IPEDS, and University of Arizona-specific metrics.
uabrc.github.io
UAB Research Computing Documentation
UAFijiSegmentation
Repo for code used on UA HPC to segment 3d confocal data in FIJI
usrse.github.io
US RSE umbrella web page
WHOI_MOM5_Docker
Container for deploying the Modular Ocean Model 5 (MOM5) ESM2M model on the WHOI HPC Poseidon.