BioWDL

ansible-cromwell-database

Sets up a cromwell database server.

compare-gff

A pipeline to compare a General Feature Format file to other General Feature Format files.

virus-assembly

A BioWDL pipeline for virus assembly.

docker-cromwell-database

A docker container containing a database for cromwell.

docker-mergecounts

docker-pyyaml

A docker image based on py3.6-slim that includes pyyaml.

docker-wiseguy

Docker container for https://github.com/sndrtj/wisecondor

gams

Genomic Annotation of Metagenomic Sequences.

generate-test-data

Pipelines for generating biowdl test data.

ReAssembly

Maps reads back to an assembly, extracts mapped reads, and starts a new assembly.

rna-coding-potential

This pipeline checks the coding potential of a RNA molecule with several tools.

test