bioteksampath

ggtext

Improved text rendering support for ggplot2

Analysis-pipeline

bedops

:microscope: BEDOPS: high-performance genomic feature operations

Brassica_oleracea_rapa_napus_code

Code for the Brassica oleracea/rapa/napus genomic comparison

CNN-RNN-Yield-Prediction

This repository contains codes for the paper entitled "A CNN-RNN Framework for Crop Yield Prediction"

data-science-from-scratch_book

code for Data Science From Scratch book

dataviz-R

A book covering the fundamentals of data visualization

DeepGP

A tool to implement Genomic Prediction Experiments using Deep Learning

deepsignal-plant

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

dgenies

Dotplot large Genomes in an Interactive, Efficient and Simple way

docs

Documentation of the Snakemake-Workflows project

DupGen_finder

A pipeline used to identify different modes of duplicated gene pairs

GBS_snakemake_pipeline

a pipeline based on the utility of snakemake to generate a vcf file from paired end sequencing data obtained from Illumina platforms

ggpubfigs

colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures

GWASpoly

GWAS software that can handle autopolyploids

hapdup

Pipeline to convert a haploid assembly into diploid

ITIPs

Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data

Jasmine

Jasmine: SV Merging Across Samples

KAML

:bicyclist: Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction

learning_vcf_file

Learning the Variant Call Format

ML-For-Beginners

12 weeks, 24 lessons, classic Machine Learning for all

nanopore-methylation-utilities

oneliners-1

One liners and useful scripts for computational biology

PlantsAndPython

rgcookbook

R Graphics Cookbook

samXgenomics.github.io

Use this template if you need a quick developer / data science portfolio! Based on a Minimal Jekyll theme for GitHub Pages.

samxgenomics.github.io-1

SamZ website

SNPRelate

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development Version)

SO-Ontologies

Collect of SO Ontologies

vcfR

Tools to work with variant call format files