Pengzhi Zhang's repositories
biopzhang.github.io
A personal website
datasharing
The Leek group guide to data sharing
DIALib-QC
DIALib-QC, an assessment tool for the systematic evaluation of spectral assay libraries to improve the data independent acquisition analysis.
forceatlas2
Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX
glide-text2im
GLIDE: a diffusion-based text-conditional image synthesis model
histocartography
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
Margaret
Metric learning-based graph-partitioned trajectory inference from single-cell data
neuraltalk2
Efficient Image Captioning code in Torch, runs on GPU
qtools
qtools has helper functions to submit jobs to compute clusters (PBS and SLURM) from within Python
reference_1000G
Process 1000G phase3 data as a reference for various populations.
reinforcement-learning
Implementation of Reinforcement Learning Algorithms. Python, OpenAI Gym, Tensorflow. Exercises and Solutions to accompany Sutton's Book and David Silver's course.
software-development
A primer on software development best practices for computational chemistry
velocyto.py
RNA velocity estimation in Python