Peter Wilkinson's repositories
2021_SIOP_Machine_Learning_Winners
Data and Code for the 2020-2021 SIOP Machine Learning Competition
amazon-omics-end-to-end-genomics
2023-02-06
aws-codebuild-docker-images
Official AWS CodeBuild repository for managed Docker images http://docs.aws.amazon.com/codebuild/latest/userguide/build-env-ref.html
aws-real-time-use-cases
Repo of quick starts for real time AWS use cases 🎓
compareRhythms
Approaches to identify Differential Rhythmicity
Deploy-Docker-Container-on-AWS
Learn how to Deploy Docker Container on AWS
FEBSJ-VDA-overestimates
Reproducible code for manuscript "Venn diagram analysis overestimates the extent of circadian rhythm reprogramming" published in FEBS Journal
genomics-data-transfer-2023-08-18-and-storage
fork of original by by Sam Castro and Ryan Ulaszek
learn-wdl
Educational materials for learning WDL
mashr
An R package for multivariate adaptive shrinkage.
MetaboAnalystR
R package for MetaboAnalyst
PD_meta_analysis
These scripts are inteded to be an extension of the method section in the paper "Meta-analysis of the Parkinson’s disease gut microbiome suggests alterations linked to intestinal inflammation"
r-lambda-workflow
Runtime for running R on AWS Lambda.
radarplot
Polar radar plots with R
TimeCycle-data
This Git Repo contains the raw data, analysis scripts, and results from the article "TimeCycle: Topology Inspired MEthod for theDetection of Cycling Transcripts in Circadian Time-Series Data". See the TimeCycle website for package details and usage.
hopr
Hands on Programming with R (https://jjallaire.github.io/hopr)
software_docker
Dockerfiles used to create the docker images containing most of the software we use.
TimeSignatR
TimeSignature R package
wdl
Workflow Description Language - Specification and Implementations
workflow-template-nextflow
Template for building a small workflow in Nextflow