Zhang (Frank) Cheng's repositories
Epigen_LIMS_DOC
Documentation for using Epigen LIMS
bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
django-cart-demo
A Django app handling shopping cart
duration_decode_manuscript
Code and Data for Gene Regulatory Strategies paper.
gdcdictionary
Data dictionary for the GDC
HiC_scripts
HiC processing scripts used in the center.
igvShiny
an htmlwidget version of igv, for RStudio and Shiny apps
Language:JavaScript000
snATAC_pipeline_scanpy_based
A single-cell ATAC pipeline based on scanpy and clustering on most variable genomic bins. Originated from Josh@Kyle's lab.
tcell_project
RNA-seq analysis for cRel paper
TLR4_signaling_model
Code and data for TRL4 signaling paper.
TNF_regulation
Collabration with Andrew. Model's coding for TNF regulation in LPS, CpG and PIC