Team MIRA - BioMedIA

deepscm

Repository for Deep Structural Causal Models for Tractable Counterfactual Inference

masf

Domain Generalization via Model-Agnostic Learning of Semantic Features

istn

Image-and-Spatial Transformer Networks

stochastic_segmentation_networks

Stochastic Segmentation Networks

blast-ct

Brain Lesion Analysis and Segmentation Tool for Computed Tomography

causal-gen

(ICML 2023) High Fidelity Image Counterfactuals with Probabilistic Causal Models

drop2

drop2 - intensity-based image registration

chexploration

Official repository for 'Algorithmic encoding of protected characteristics in chest X-ray disease detection models'

demystifying-diffusion

cxr-foundation-bias

Official repository for 'Risk of Bias in Chest Radiography Deep Learning Foundation Models'

subgroup-separability

[MICCAI 2023] "The Role of Subgroup Separability in Group-Fair Medical Image Classification"

atlas-istn

Code release for Atlas-ISTN

medmesh

Code repository for the paper 'A comparative study of graph neural networks for shape classification in neuroimaging'

upa

Unsupervised prediction alignment for automatic correction of acquisition shift in image classification

dixonfix

Tool for correcting fat-water swaps in Dixon MRI

sos-vae

Official Code for "Structured Uncertainty in the Observation Space of Variational Autoencoders"

atmil

counterfactual-contrastive

Code for the paper "Counterfactual contrastive learning: robust representations via causal image synthesis"

stitching

Stitching tool for composing whole-body scans from multiple stations

brain-age-cnn

counterfactual_axiomatic_soundness

oak2

Random forests for 2D and 3D image analysis