Beast code in Giters

Kevin Jacobs's repositories

vgraph

vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph representation of genomic variants in to precisely compare complex variants that are refractory to comparison by conventional comparison methods.

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glu-genetics

Automatically exported from code.google.com/p/glu-genetics

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esa

Python library implementing Enhanced Suffix Arrays and related algorithms

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pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

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boltons

Like builtins, but boltons. Constructs/recipes/snippets that would be handy in the standard library. Nothing like Michael Bolton.

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htslib

C library for high-throughput sequencing data formats

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server

A reference implementation of the APIs defined in the schemas repository.

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varcomp

Tools for calling and comparing variants from simulated read sets

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