The Bioinformatics Repository's repositories
somaticseq
An ensemble approach to accurately detect somatic mutations using SomaticSeq
neusomatic
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
fermi-lite
Standalone C library for assembling Illumina short reads in small regions