bioinfomaticsCSU / MAC

Merging assemblies by using adjacency algebraic model and classification

MAC2.0

Merging assemblies by using adjacency algebraic model and classification.

About Updating

MAC2.0 uses C++ to refactor the main contents of the original MAC, fixing errors in dealing large files. MAC2.0 removes the step of evalution, which does't need raw reads as input any more.

Pre-installed:

MUMmer: http://mummer.sourceforge.net/

Please make sure the path of MUMmer has been added into system variable.

Usage:

g++ MAC2.0.cpp -o MAC2.0

MAC2.0 <contig_query.fa> <contig_reference.fa>

Notification:

• The input files need to be placed in the ./input folder.

• The output file will be output to the ./output folder.

• Because of some implementation issues, the MAs may be a little more than the original approach.

• If you have multiple contig files (over 3) to merge, please try to merge any two of them first, then merge the result with the other files iteratively.