Institut Curie, Bioinformatics Core Facility's repositories
geniac-template
This is a template to pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).
annotationMaker
Build indexes and annotation files for Nextflow pipelines
as-mapping
Nextflow pipeline for Allele-specific analysis
scChIP-inDrop
inDrop single-cell ChIPseq data analysis
scRNA-SmartSeq3
Smartseq3 single-cell RNAseq data analysis.
biogitflow
Development worklow protocols for bioinformatics pipelines with git and gitlab
bioshiny-modules-library
R package containing modules for an easier Shiny Apps development
cookieCrispR
Shiny R package for CRISPR screen analysis
geniac-demo
This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).
geniac-demo-dsl2
This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow DSL2 and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).